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vg
tools for working with variation graphs
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This is the complete list of members for vg::PathIndex, including all inherited members.
| apply_translation(const Translation &translation) | vg::PathIndex | |
| apply_translations(const vector< Translation > &translations) | vg::PathIndex | |
| at_position(size_t position) const | vg::PathIndex | |
| begin() const | vg::PathIndex | |
| by_id | vg::PathIndex | |
| by_start | vg::PathIndex | |
| end() const | vg::PathIndex | |
| find_in_orientation(int64_t node_id, bool is_reverse) const | vg::PathIndex | |
| find_position(size_t position) const | vg::PathIndex | |
| get_contained_orientations(int64_t node_id) const | vg::PathIndex | |
| iterator typedef | vg::PathIndex | |
| last_node_length | vg::PathIndex | protected |
| mapping_positions | vg::PathIndex | |
| node_length(const iterator &here) const | vg::PathIndex | |
| node_occurrences | vg::PathIndex | protected |
| parse_translation(const Translation &translation) | vg::PathIndex | protected |
| path_contains_node(int64_t node_id) const | vg::PathIndex | |
| path_contains_node_in_orientation(int64_t node_id, bool is_reverse) const | vg::PathIndex | |
| PathIndex(const Path &path) | vg::PathIndex | |
| PathIndex(const list< mapping_t > &mappings) | vg::PathIndex | |
| PathIndex(const list< mapping_t > &mappings, VG &vg) | vg::PathIndex | |
| PathIndex(const Path &path, const HandleGraph &graph) | vg::PathIndex | |
| PathIndex(VG &vg, const string &path_name, bool extract_sequence=false) | vg::PathIndex | |
| PathIndex(const PathHandleGraph &graph, const string &path_name, bool extract_sequence=false) | vg::PathIndex | |
| replace_occurrence(iterator to_replace, const vector< Mapping > &replacements) | vg::PathIndex | protected |
| round_outward(size_t start, size_t past_end) const | vg::PathIndex | |
| sequence | vg::PathIndex | |
| update_mapping_positions(VG &vg, const string &path_name) | vg::PathIndex |
1.8.17