vg
tools for working with variation graphs
vg::RecombinatorHaplotype Member List

This is the complete list of members for vg::RecombinatorHaplotype, including all inherited members.

connect(gbwt::node_type until, const gbwtgraph::GBWTGraph &graph)vg::RecombinatorHaplotypeprivate
contig_namevg::RecombinatorHaplotype
extend(sequence_type sequence, const Haplotypes::Subchain &subchain, const Recombinator &recombinator, gbwt::GBWTBuilder &builder, gbwtgraph::MetadataBuilder &metadata)vg::RecombinatorHaplotype
finish(const Recombinator &recombinator, gbwt::GBWTBuilder &builder, gbwtgraph::MetadataBuilder &metadata)vg::RecombinatorHaplotype
fragmentvg::RecombinatorHaplotype
idvg::RecombinatorHaplotype
insert(gbwt::GBWTBuilder &builder, gbwtgraph::MetadataBuilder &metadata)vg::RecombinatorHaplotypeprivate
pathvg::RecombinatorHaplotype
positionvg::RecombinatorHaplotype
prefix(gbwt::size_type sequence_id, gbwt::node_type until, const gbwt::GBWT &index)vg::RecombinatorHaplotypeprivate
sequence_idvg::RecombinatorHaplotype
sequence_type typedefvg::RecombinatorHaplotype
suffix(const gbwt::GBWT &index)vg::RecombinatorHaplotypeprivate
take(gbwt::size_type sequence_id, const Recombinator &recombinator, gbwt::GBWTBuilder &builder, gbwtgraph::MetadataBuilder &metadata)vg::RecombinatorHaplotype
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