vg
tools for working with variation graphs
vg
WFAAlignment
vg::WFAAlignment Member List
This is the complete list of members for
vg::WFAAlignment
, including all inherited members.
append
(Edit edit, uint32_t length)
vg::WFAAlignment
check_lengths
(const HandleGraph &graph) const
vg::WFAAlignment
deletion
enum value
vg::WFAAlignment
Edit
enum name
vg::WFAAlignment
edits
vg::WFAAlignment
empty
() const
vg::WFAAlignment
inline
final_offset
(const gbwtgraph::GBWTGraph &graph) const
vg::WFAAlignment
flip
(const gbwtgraph::GBWTGraph &graph, const std::string &sequence)
vg::WFAAlignment
from_extension
(const GaplessExtension &extension)
vg::WFAAlignment
static
insertion
enum value
vg::WFAAlignment
join
(const WFAAlignment &second)
vg::WFAAlignment
length
vg::WFAAlignment
make_empty
()
vg::WFAAlignment
static
make_unlocalized_insertion
(size_t sequence_offset, size_t length, int score)
vg::WFAAlignment
static
match
enum value
vg::WFAAlignment
mismatch
enum value
vg::WFAAlignment
node_offset
vg::WFAAlignment
ok
vg::WFAAlignment
operator bool
() const
vg::WFAAlignment
inline
path
vg::WFAAlignment
print
(const HandleGraph &graph, std::ostream &out) const
vg::WFAAlignment
print
(std::ostream &out) const
vg::WFAAlignment
score
vg::WFAAlignment
seq_offset
vg::WFAAlignment
to_path
(const HandleGraph &graph, const std::string &sequence) const
vg::WFAAlignment
unlocalized_insertion
() const
vg::WFAAlignment
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