vg
tools for working with variation graphs
vg::WFAAlignment Member List

This is the complete list of members for vg::WFAAlignment, including all inherited members.

append(Edit edit, uint32_t length)vg::WFAAlignment
check_lengths(const HandleGraph &graph) constvg::WFAAlignment
deletion enum valuevg::WFAAlignment
Edit enum namevg::WFAAlignment
editsvg::WFAAlignment
empty() constvg::WFAAlignmentinline
final_offset(const gbwtgraph::GBWTGraph &graph) constvg::WFAAlignment
flip(const gbwtgraph::GBWTGraph &graph, const std::string &sequence)vg::WFAAlignment
from_extension(const GaplessExtension &extension)vg::WFAAlignmentstatic
insertion enum valuevg::WFAAlignment
join(const WFAAlignment &second)vg::WFAAlignment
lengthvg::WFAAlignment
make_empty()vg::WFAAlignmentstatic
make_unlocalized_insertion(size_t sequence_offset, size_t length, int score)vg::WFAAlignmentstatic
match enum valuevg::WFAAlignment
mismatch enum valuevg::WFAAlignment
node_offsetvg::WFAAlignment
okvg::WFAAlignment
operator bool() constvg::WFAAlignmentinline
pathvg::WFAAlignment
print(const HandleGraph &graph, std::ostream &out) constvg::WFAAlignment
print(std::ostream &out) constvg::WFAAlignment
scorevg::WFAAlignment
seq_offsetvg::WFAAlignment
to_path(const HandleGraph &graph, const std::string &sequence) constvg::WFAAlignment
unlocalized_insertion() constvg::WFAAlignment