alignment_scorer.cpp File Reference

#include "alignment_scorer.hpp"
#include <algorithm>
#include <cassert>
#include <cmath>
#include <cstdlib>
#include <iostream>
#include <limits>
#include "alignment.hpp"
#include "crash.hpp"
#include "gssw.h"

Namespaces
	vg

Functions
int32_t	vg::score_gap (size_t gap_length, int32_t gap_open, int32_t gap_extension)
	Score a gap with the given open and extension scores. More...