alignment_scorer.hpp File Reference

#include <cstdint>
#include <functional>
#include <string>
#include <vector>
#include <vg/vg.pb.h>
#include "handle.hpp"
#include "path.hpp"
#include "types.hpp"

Classes
class	vg::AlignmentScorer
class	vg::EditAlignmentScorer
class	vg::MatrixAlignmentScorer
class	vg::QualAdjAlignmentScorer

Namespaces
	vg

Functions
int32_t	vg::score_gap (size_t gap_length, int32_t gap_open, int32_t gap_extension)
	Score a gap with the given open and extension scores. More...