#include <iostream>
#include <sstream>
#include <algorithm>
#include <cctype>
#include <unistd.h>
#include <getopt.h>
#include <htslib/hts.h>
#include <htslib/vcf.h>
#include <gbwt/utils.h>
#include <omp.h>
#include "subcommand.hpp"
#include "index_registry.hpp"
#include "utility.hpp"

Functions
int64_t	parse_memory_usage (const Logger &logger, const string &mem_arg)

string	mem_usage_string (int64_t mem)

pair< string, vector< string > >	parse_provide_string (const Logger &logger, const string &str)

void	help_autoindex (char **argv)

int	main_autoindex (int argc, char **argv)

Detailed Description

Defines the "vg autoindex" subcommand, which produces indexes needed for other subcommands

Function Documentation

◆ help_autoindex()

void help_autoindex ( char ** argv )

◆ main_autoindex()

int main_autoindex	(	int	argc,
		char **	argv
	)

◆ mem_usage_string()

string mem_usage_string ( int64_t mem )

◆ parse_memory_usage()

int64_t parse_memory_usage	(	const Logger &	logger,
		const string &	mem_arg
	)

◆ parse_provide_string()

pair<string, vector<string> > parse_provide_string	(	const Logger &	logger,
		const string &	str
	)