chain_main.cpp File Reference

#include <jansson.h>
#include <omp.h>
#include <unistd.h>
#include <getopt.h>
#include <iostream>
#include "subcommand.hpp"
#include "../algorithms/chain_items.hpp"
#include "../integrated_snarl_finder.hpp"

Functions
void	help_chain (char **argv)
int	main_chain (int argc, char **argv)

Detailed Description

Defines the "vg chain" subcommand, which runs a serialized hit chaining problem.

Function Documentation

help_chain()

void help_chain

(

char **

argv

)

main_chain()

int main_chain	(	int	argc,
		char **	argv
	)