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vg
tools for working with variation graphs
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This is the complete list of members for vg::AlignmentScorer, including all inherited members.
| alignment_score_partition_function(double lambda, const double matrix[16], const double nt_freqs[4]) | vg::AlignmentScorer | privatestatic |
| get_log_base() const =0 | vg::AlignmentScorer | pure virtual |
| recover_log_base(const double matrix[16], double gc_content, double tol=1e-12) | vg::AlignmentScorer | protectedstatic |
| score_alignment(const Alignment &aln) const =0 | vg::AlignmentScorer | pure virtual |
| verify_valid_log_odds_score_matrix(const double matrix[16], const double nt_freqs[4]) | vg::AlignmentScorer | privatestatic |
| ~AlignmentScorer()=default | vg::AlignmentScorer | virtual |
1.9.1