vg::BandedGlobalAligner< IntType >::AltTracebackStack::Deflection Class Reference

#include <banded_global_aligner.hpp>

Public Member Functions
	Deflection (const int64_t from_node_id, const int64_t row_idx, const int64_t col_idx, const int64_t to_node_id, const matrix_t to_matrix)
	~Deflection ()

Public Attributes
const int64_t	from_node_id
	Node ID where deflection occurs. More...
const int64_t	row_idx
	Coordinate from rectangularized band (not original matrix) where deflection occurs. More...
const int64_t	col_idx
	Coordinate from rectangularized band (not original matrix) where deflection occurs. More...
const int64_t	to_node_id
	Node to deflect to. More...
const matrix_t	to_matrix
	Dynamic programming matrix deflect to. More...

Detailed Description

template<class IntType>
class vg::BandedGlobalAligner< IntType >::AltTracebackStack::Deflection

Represents a deviation from the optimal traceback that a sub-optimal traceback takes.

Constructor & Destructor Documentation

Deflection()

template<class IntType >

vg::BandedGlobalAligner< IntType >::AltTracebackStack::Deflection::Deflection	(	const int64_t	from_node_id,
		const int64_t	row_idx,
		const int64_t	col_idx,
		const int64_t	to_node_id,
		const matrix_t	to_matrix
	)

~Deflection()

template<class IntType >

vg::BandedGlobalAligner< IntType >::AltTracebackStack::Deflection::~Deflection

(

)

Member Data Documentation

col_idx

template<class IntType >

const int64_t vg::BandedGlobalAligner< IntType >::AltTracebackStack::Deflection::col_idx

Coordinate from rectangularized band (not original matrix) where deflection occurs.

from_node_id

template<class IntType >

const int64_t vg::BandedGlobalAligner< IntType >::AltTracebackStack::Deflection::from_node_id

Node ID where deflection occurs.

row_idx

template<class IntType >

const int64_t vg::BandedGlobalAligner< IntType >::AltTracebackStack::Deflection::row_idx

Coordinate from rectangularized band (not original matrix) where deflection occurs.

to_matrix

template<class IntType >

const matrix_t vg::BandedGlobalAligner< IntType >::AltTracebackStack::Deflection::to_matrix

Dynamic programming matrix deflect to.

to_node_id

template<class IntType >

const int64_t vg::BandedGlobalAligner< IntType >::AltTracebackStack::Deflection::to_node_id

Node to deflect to.

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The documentation for this class was generated from the following files:

• src/banded_global_aligner.hpp
• src/banded_global_aligner.cpp