#include <dinucleotide_machine.hpp>
◆ DinucleotideMachine()
| vg::DinucleotideMachine::DinucleotideMachine |
( |
| ) |
|
◆ ~DinucleotideMachine()
| vg::DinucleotideMachine::~DinucleotideMachine |
( |
| ) |
|
|
default |
◆ init_state()
| uint32_t vg::DinucleotideMachine::init_state |
( |
| ) |
const |
Return an empty dinucleotide set.
◆ matches() [1/2]
| bool vg::DinucleotideMachine::matches |
( |
uint32_t |
state, |
|
|
const char * |
dinucleotide |
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) |
| const |
Return true if the set includes this dinucleotide. Only valid for dinucleotides of ACGT (never N).
◆ matches() [2/2]
| bool vg::DinucleotideMachine::matches |
( |
uint32_t |
state, |
|
|
const string & |
dinucleotide |
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) |
| const |
◆ merge_state()
| uint32_t vg::DinucleotideMachine::merge_state |
( |
uint32_t |
state_1, |
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|
uint32_t |
state_2 |
|
) |
| const |
Get the union of two dinucleotide sets.
◆ update_state()
| uint32_t vg::DinucleotideMachine::update_state |
( |
uint32_t |
state, |
|
|
char |
next |
|
) |
| const |
Get the dinucleotide set that results from extending the set by the given character Ns are valid, but will result in no matches
◆ nt_table
| uint32_t vg::DinucleotideMachine::nt_table[256] |
|
private |
◆ transition_table
| uint32_t vg::DinucleotideMachine::transition_table[256] |
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private |
The documentation for this class was generated from the following files:
