vg
tools for working with variation graphs
vg::IntegratedSnarlFinder Member List

This is the complete list of members for vg::IntegratedSnarlFinder, including all inherited members.

find_snarls()vg::HandleGraphSnarlFindervirtual
find_snarls_parallel()vg::IntegratedSnarlFindervirtual
find_snarls_unindexed()vg::HandleGraphSnarlFinderprotectedvirtual
graphvg::HandleGraphSnarlFinderprotected
HandleGraphSnarlFinder(const HandleGraph *graph)vg::HandleGraphSnarlFinder
IntegratedSnarlFinder(const HandleGraph &graph)vg::IntegratedSnarlFinder
traverse_computed_decomposition(MergedAdjacencyGraph &cactus, const MergedAdjacencyGraph &forest, vector< pair< size_t, vector< handle_t >>> &longest_paths, unordered_map< handle_t, handle_t > &towards_deepest_leaf, vector< pair< size_t, handle_t >> &longest_cycles, unordered_map< handle_t, handle_t > &next_along_cycle, const function< void(handle_t)> &begin_chain, const function< void(handle_t)> &end_chain, const function< void(handle_t)> &begin_snarl, const function< void(handle_t)> &end_snarl) constvg::IntegratedSnarlFinderprivate
traverse_decomposition(const function< void(handle_t)> &begin_chain, const function< void(handle_t)> &end_chain, const function< void(handle_t)> &begin_snarl, const function< void(handle_t)> &end_snarl) constvg::IntegratedSnarlFindervirtual
~HandleGraphSnarlFinder()=defaultvg::HandleGraphSnarlFindervirtual
~SnarlFinder()=defaultvg::SnarlFindervirtual