vg
tools for working with variation graphs
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This is the complete list of members for vg::IntegratedSnarlFinder, including all inherited members.
find_snarls() | vg::HandleGraphSnarlFinder | virtual |
find_snarls_parallel() | vg::IntegratedSnarlFinder | virtual |
find_snarls_unindexed() | vg::HandleGraphSnarlFinder | protectedvirtual |
graph | vg::HandleGraphSnarlFinder | protected |
HandleGraphSnarlFinder(const HandleGraph *graph) | vg::HandleGraphSnarlFinder | |
IntegratedSnarlFinder(const HandleGraph &graph) | vg::IntegratedSnarlFinder | |
traverse_computed_decomposition(MergedAdjacencyGraph &cactus, const MergedAdjacencyGraph &forest, vector< pair< size_t, vector< handle_t >>> &longest_paths, unordered_map< handle_t, handle_t > &towards_deepest_leaf, vector< pair< size_t, handle_t >> &longest_cycles, unordered_map< handle_t, handle_t > &next_along_cycle, const function< void(handle_t)> &begin_chain, const function< void(handle_t)> &end_chain, const function< void(handle_t)> &begin_snarl, const function< void(handle_t)> &end_snarl) const | vg::IntegratedSnarlFinder | private |
traverse_decomposition(const function< void(handle_t)> &begin_chain, const function< void(handle_t)> &end_chain, const function< void(handle_t)> &begin_snarl, const function< void(handle_t)> &end_snarl) const | vg::IntegratedSnarlFinder | virtual |
~HandleGraphSnarlFinder()=default | vg::HandleGraphSnarlFinder | virtual |
~SnarlFinder()=default | vg::SnarlFinder | virtual |