#include <snarls.hpp>
Inheritance diagram for vg::SnarlFinder:
Public Member Functions | |
| virtual | ~SnarlFinder ()=default |
| virtual SnarlManager | find_snarls ()=0 |
| virtual SnarlManager | find_snarls_parallel () |
Detailed Description
Represents a strategy for finding (nested) sites in a vg graph that can be described by snarls. Polymorphic base class/interface.
Constructor & Destructor Documentation
◆ ~SnarlFinder()
|
virtualdefault |
Member Function Documentation
◆ find_snarls()
|
pure virtual |
Find all the snarls, and put them into a SnarlManager.
Implemented in vg::HandleGraphSnarlFinder, and vg::CactusSnarlFinder.
◆ find_snarls_parallel()
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virtual |
Find all the snarls of weakly connected components, optionally in parallel. If not implemented, defaults to the single-threaded implementation.
Reimplemented in vg::IntegratedSnarlFinder, and vg::CactusSnarlFinder.
The documentation for this class was generated from the following files:
- src/snarls.hpp
- src/snarls.cpp
