vg::Masker Class Reference

#include <masker.hpp>

Public Member Functions
	Masker (gbwtgraph::GBWTGraph &graph, const SnarlManager *snarl_manager=nullptr)
	Masker (MutablePathDeletableHandleGraph &graph, const SnarlManager *snarl_manager=nullptr)
	Masker ()=default
	~Masker ()=default
	Masker (Masker &&other)=default
Masker &	operator= (Masker &&other)=default
void	mask_sequences (const std::vector< std::tuple< std::string, size_t, size_t >> &regions) const

Private Member Functions
void	init_snarls ()
void	apply_mask_sequences (const std::vector< std::tuple< step_handle_t, size_t, step_handle_t, size_t >> &mask_intervals, const std::function< void(handle_t, const std::string &)> &apply_mask) const

Private Attributes
PathHandleGraph *	graph = nullptr
const SnarlManager *	snarl_manager = nullptr
std::unique_ptr< SnarlManager >	own_snarl_manager

Constructor & Destructor Documentation

Masker() [1/4]

vg::Masker::Masker	(	gbwtgraph::GBWTGraph &	graph,
		const SnarlManager *	snarl_manager = nullptr
	)

Masker() [2/4]

vg::Masker::Masker	(	MutablePathDeletableHandleGraph &	graph,
		const SnarlManager *	snarl_manager = nullptr
	)

Masker() [3/4]

vg::Masker::Masker ( )

default

~Masker()

vg::Masker::~Masker ( )

default

Masker() [4/4]

vg::Masker::Masker ( Masker &&  other )

default

Member Function Documentation

apply_mask_sequences()

void vg::Masker::apply_mask_sequences ( const std::vector< std::tuple< step_handle_t, size_t, step_handle_t, size_t >> &  mask_intervals, const std::function< void(handle_t, const std::string &)> &  apply_mask  ) const

private

init_snarls()

void vg::Masker::init_snarls ( )

private

mask_sequences()

void vg::Masker::mask_sequences

(

const std::vector< std::tuple< std::string, size_t, size_t >> &

regions

)

const

operator=()

Masker& vg::Masker::operator= ( Masker &&  other )

default

Member Data Documentation

graph

PathHandleGraph* vg::Masker::graph = nullptr

private

own_snarl_manager

std::unique_ptr<SnarlManager> vg::Masker::own_snarl_manager

private

snarl_manager

const SnarlManager* vg::Masker::snarl_manager = nullptr

private

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The documentation for this class was generated from the following files:

• src/masker.hpp
• src/masker.cpp