vg::OrientedDistanceMeasurer Class Reference

#include <cluster.hpp>

Inheritance diagram for vg::OrientedDistanceMeasurer:

Public Member Functions
virtual	~OrientedDistanceMeasurer ()=default
virtual int64_t	oriented_distance (const pos_t &pos_1, const pos_t &pos_2)=0
virtual vector< vector< size_t > >	get_buckets (const function< pos_t(size_t)> &get_position, size_t num_items)=0
virtual vector< pair< size_t, size_t > >	exclude_merges (vector< vector< size_t >> &current_groups, const function< pos_t(size_t)> &get_position)=0

Constructor & Destructor Documentation

~OrientedDistanceMeasurer()

virtual vg::OrientedDistanceMeasurer::~OrientedDistanceMeasurer ( )

virtualdefault

Member Function Documentation

exclude_merges()

virtual vector<pair<size_t, size_t> > vg::OrientedDistanceMeasurer::exclude_merges ( vector< vector< size_t >> &  current_groups, const function< pos_t(size_t)> &  get_position  )

pure virtual

Return a vector of pairs of groups (referred to by indexes in the current_groups vector) that cannot have finite distances between them (typically because they are on separate components).

Implemented in vg::SnarlOrientedDistanceMeasurer, and vg::PathOrientedDistanceMeasurer.

get_buckets()

virtual vector<vector<size_t> > vg::OrientedDistanceMeasurer::get_buckets ( const function< pos_t(size_t)> &  get_position, size_t  num_items  )

pure virtual

Return a vector of groups that we believe will have finite distances under this metric, can be empty.

Implemented in vg::SnarlOrientedDistanceMeasurer, and vg::PathOrientedDistanceMeasurer.

oriented_distance()

virtual int64_t vg::OrientedDistanceMeasurer::oriented_distance ( const pos_t &  pos_1, const pos_t &  pos_2  )

pure virtual

Returns a signed distance, where positive indicates that pos_2 is to the right of pos_1, and negative indicates to the left. If the distance is infinite or can't be determined, returns numeric_limits<int64_t>::max().

Implemented in vg::SnarlOrientedDistanceMeasurer, and vg::PathOrientedDistanceMeasurer.

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The documentation for this class was generated from the following file:

• src/cluster.hpp