vg
tools for working with variation graphs
vg::PathRestrictedTraversalFinder Member List

This is the complete list of members for vg::PathRestrictedTraversalFinder, including all inherited members.

allow_duplicatesvg::PathRestrictedTraversalFinderprivate
find_named_traversals(const Snarl &site)vg::PathRestrictedTraversalFindervirtual
find_traversals(const Snarl &site)vg::PathRestrictedTraversalFindervirtual
vg::TraversalFinder::find_traversals(const handle_t &snarl_start, const handle_t &snarl_end)vg::TraversalFinderinlinevirtual
graphvg::PathRestrictedTraversalFinderprivate
max_path_search_stepsvg::PathRestrictedTraversalFinderprivate
min_recurrencevg::PathRestrictedTraversalFinderprivate
PathRestrictedTraversalFinder(VG &graph, SnarlManager &snarl_manager, map< string, const Alignment * > &reads_by_name, int min_recurrence=2, int max_path_search_steps=100, bool allow_duplicates=false)vg::PathRestrictedTraversalFinder
reads_by_namevg::PathRestrictedTraversalFinderprivate
snarl_managervg::PathRestrictedTraversalFinderprivate
~PathRestrictedTraversalFinder()vg::PathRestrictedTraversalFindervirtual
~TraversalFinder()=defaultvg::TraversalFindervirtual
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