vg::TraversalFinder Class Reference

#include <traversal_finder.hpp>

Inheritance diagram for vg::TraversalFinder:

Public Member Functions
virtual	~TraversalFinder ()=default
virtual vector< SnarlTraversal >	find_traversals (const Snarl &site)=0
virtual vector< Traversal >	find_traversals (const handle_t &snarl_start, const handle_t &snarl_end)

Detailed Description

Represents a strategy for finding traversals of (nested) sites. Polymorphic base class/interface.

Constructor & Destructor Documentation

~TraversalFinder()

virtual vg::TraversalFinder::~TraversalFinder ( )

virtualdefault

Member Function Documentation

find_traversals() [1/2]

virtual vector<Traversal> vg::TraversalFinder::find_traversals ( const handle_t &  snarl_start, const handle_t &  snarl_end  )

inlinevirtual

Reimplemented in vg::GBWTTraversalFinder, and vg::PathTraversalFinder.

find_traversals() [2/2]

virtual vector<SnarlTraversal> vg::TraversalFinder::find_traversals ( const Snarl &  site )

pure virtual

Implemented in vg::GBWTTraversalFinder, vg::FlowTraversalFinder, vg::VCFTraversalFinder, vg::RepresentativeTraversalFinder, vg::TrivialTraversalFinder, vg::PathTraversalFinder, vg::PathBasedTraversalFinder, vg::PathRestrictedTraversalFinder, vg::ReadRestrictedTraversalFinder, vg::NestedTraversalFinder, and vg::ExhaustiveTraversalFinder.

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The documentation for this class was generated from the following file:

• src/traversal_finder.hpp