traversal_finder.hpp File Reference

#include <iostream>
#include <algorithm>
#include <functional>
#include <cmath>
#include <regex>
#include <limits>
#include <unordered_set>
#include <unordered_map>
#include <list>
#include <structures/immutable_list.hpp>
#include <vg/vg.pb.h>
#include "vg.hpp"
#include "translator.hpp"
#include "hash_map.hpp"
#include "utility.hpp"
#include "types.hpp"
#include "snarls.hpp"
#include "path_index.hpp"
#include "genotypekit.hpp"
#include "gbwt_helper.hpp"

Classes
class	vg::TraversalFinder
class	vg::ExhaustiveTraversalFinder
class	vg::SupportRestrictedTraversalFinder
class	vg::ReadRestrictedTraversalFinder
class	vg::PathRestrictedTraversalFinder
class	vg::PathBasedTraversalFinder
class	vg::PathTraversalFinder
class	vg::TrivialTraversalFinder
class	vg::RepresentativeTraversalFinder
class	vg::VCFTraversalFinder
class	vg::FlowTraversalFinder
class	vg::GBWTTraversalFinder

Namespaces
	vg

Typedefs
using	vg::Traversal = vector< handle_t >
using	vg::PathInterval = pair< step_handle_t, step_handle_t >

Functions
string	vg::traversal_to_string (const PathHandleGraph *graph, const Traversal &traversal, int64_t max_steps)
string	vg::graph_interval_to_string (const HandleGraph *graph, const handle_t &start_handle, const handle_t &end_handle)
string	vg::path_interval_to_string (const PathHandleGraph *graph, const PathInterval &path_interval)