vg.hpp File Reference

#include <vector>
#include <set>
#include <string>
#include <deque>
#include <list>
#include <array>
#include <omp.h>
#include <unistd.h>
#include <limits.h>
#include <algorithm>
#include <random>
#include "gssw.h"
#include <gcsa/gcsa.h>
#include <gcsa/lcp.h>
#include "aligner.hpp"
#include "ssw_aligner.hpp"
#include "region.hpp"
#include "path.hpp"
#include "utility.hpp"
#include "alignment.hpp"
#include "mem.hpp"
#include <vg/vg.pb.h>
#include <vg/io/stream.hpp>
#include <vg/io/protobuf_emitter.hpp>
#include "hash_map.hpp"
#include "progressive.hpp"
#include "lru_cache.h"
#include "Variant.h"
#include "Fasta.h"
#include "swap_remove.hpp"
#include "pictographs.hpp"
#include "colors.hpp"
#include "types.hpp"
#include "nodetraversal.hpp"
#include "nodeside.hpp"
#include "handle.hpp"

Classes
struct	vg::KmerPosition
class	vg::VG
struct	vg::VG::Plan
	Structure for managing parallel construction of a graph. More...

Namespaces
	vg