vg
tools for working with variation graphs
vg::RepresentativeTraversalFinder Member List

This is the complete list of members for vg::RepresentativeTraversalFinder, including all inherited members.

bfs_left(Visit visit, PathIndex &index, bool stop_if_visited=false, const Snarl *in_snarl=nullptr, size_t both_orientations_distance=0)vg::RepresentativeTraversalFinderprotected
bfs_right(Visit visit, PathIndex &index, bool stop_if_visited=false, const Snarl *in_snarl=nullptr, size_t both_orientations_distance=0)vg::RepresentativeTraversalFinderprotected
bp_length(const structures::ImmutableList< Visit > &path)vg::RepresentativeTraversalFinderprotected
eat_trivial_childrenvg::RepresentativeTraversalFinder
find_backbone(const Snarl &site)vg::RepresentativeTraversalFinderprotected
find_bubble(id_t node, const edge_t *edge, const Snarl *snarl, PathIndex &index, const Snarl &site)vg::RepresentativeTraversalFinderprotected
find_traversals(const Snarl &site)vg::RepresentativeTraversalFindervirtual
vg::TraversalFinder::find_traversals(const handle_t &snarl_start, const handle_t &snarl_end)vg::TraversalFinderinlinevirtual
get_edge_supportvg::RepresentativeTraversalFinderprotected
get_indexvg::RepresentativeTraversalFinderprotected
get_node_supportvg::RepresentativeTraversalFinderprotected
graphvg::RepresentativeTraversalFinderprotected
has_supportsvg::RepresentativeTraversalFinderprotected
max_bubble_pathsvg::RepresentativeTraversalFinderprotected
max_depthvg::RepresentativeTraversalFinderprotected
max_widthvg::RepresentativeTraversalFinderprotected
min_edge_supportvg::RepresentativeTraversalFinderprotected
min_node_supportvg::RepresentativeTraversalFinderprotected
min_support_in_path(const list< Visit > &path)vg::RepresentativeTraversalFinderprotected
other_orientation_timeoutvg::RepresentativeTraversalFinder
RepresentativeTraversalFinder(const PathHandleGraph &graph, SnarlManager &snarl_manager, size_t max_depth, size_t max_width, size_t max_bubble_paths, size_t min_node_support=1, size_t min_edge_support=1, function< PathIndex *(const Snarl &)> get_index=[](const Snarl &s) { return nullptr;}, function< Support(id_t)> get_node_support=nullptr, function< Support(edge_t)> get_edge_support=nullptr)vg::RepresentativeTraversalFinder
snarl_managervg::RepresentativeTraversalFinderprotected
verbosevg::RepresentativeTraversalFinder
~RepresentativeTraversalFinder()=defaultvg::RepresentativeTraversalFindervirtual
~TraversalFinder()=defaultvg::TraversalFindervirtual