vg::Viz Class Reference

#include <viz.hpp>

Public Member Functions
	Viz (void)
	~Viz (void)
	Viz (PathHandleGraph *x, vector< Packer > *p, const vector< string > &n, const string &o, int w, int h, bool c, bool d, bool t)
void	init (PathHandleGraph *x, vector< Packer > *p, const vector< string > &n, const string &o, int w, int h, bool c, bool d, bool t)
void	draw (void)
void	draw_graph (void)
void	close (void)

Private Member Functions
double	node_offset (id_t id)
double	nodes_before_offset (size_t pos)
uint64_t	id_to_rank (nid_t id)
void	set_hash_color (const string &str)
void	compute_borders_and_dimensions (void)
void	check_status (const cairo_status_t &status, const std::string &task="calling Cairo")

Private Attributes
unordered_map< nid_t, uint64_t >	id_rank_map
PathHandleGraph *	xgidx = nullptr
vector< Packer > *	packs = nullptr
vector< string >	pack_names
string	outfile
cairo_surface_t *	surface = nullptr
cairo_t *	cr = nullptr
bool	output_png = false
bool	output_svg = false
bool	show_cnv = true
bool	show_dna = true
bool	show_paths = true
int	image_width = 0
int	image_height = 0
int	left_border = 0
int	top_border = 0
size_t	seq_length = 0

Constructor & Destructor Documentation

Viz() [1/2]

vg::Viz::Viz ( void  )

inline

~Viz()

vg::Viz::~Viz ( void  )

inline

Viz() [2/2]

vg::Viz::Viz	(	PathHandleGraph *	x,
		vector< Packer > *	p,
		const vector< string > &	n,
		const string &	o,
		int	w,
		int	h,
		bool	c,
		bool	d,
		bool	t
	)

Member Function Documentation

check_status()

void vg::Viz::check_status ( const cairo_status_t &  status, const std::string &  task = "calling Cairo"  )

private

close()

void vg::Viz::close

(

void

)

compute_borders_and_dimensions()

void vg::Viz::compute_borders_and_dimensions ( void  )

private

draw()

void vg::Viz::draw

(

void

)

draw_graph()

void vg::Viz::draw_graph

(

void

)

id_to_rank()

uint64_t vg::Viz::id_to_rank ( nid_t  id )

private

init()

void vg::Viz::init	(	PathHandleGraph *	x,
		vector< Packer > *	p,
		const vector< string > &	n,
		const string &	o,
		int	w,
		int	h,
		bool	c,
		bool	d,
		bool	t
	)

node_offset()

double vg::Viz::node_offset ( id_t  id )

private

nodes_before_offset()

double vg::Viz::nodes_before_offset ( size_t  pos )

private

set_hash_color()

void vg::Viz::set_hash_color ( const string &  str )

private

Member Data Documentation

cr

cairo_t* vg::Viz::cr = nullptr

private

id_rank_map

unordered_map<nid_t, uint64_t> vg::Viz::id_rank_map

private

image_height

int vg::Viz::image_height = 0

private

image_width

int vg::Viz::image_width = 0

private

left_border

int vg::Viz::left_border = 0

private

outfile

string vg::Viz::outfile

private

output_png

bool vg::Viz::output_png = false

private

output_svg

bool vg::Viz::output_svg = false

private

pack_names

vector<string> vg::Viz::pack_names

private

packs

vector<Packer>* vg::Viz::packs = nullptr

private

seq_length

size_t vg::Viz::seq_length = 0

private

show_cnv

bool vg::Viz::show_cnv = true

private

show_dna

bool vg::Viz::show_dna = true

private

show_paths

bool vg::Viz::show_paths = true

private

surface

cairo_surface_t* vg::Viz::surface = nullptr

private

top_border

int vg::Viz::top_border = 0

private

xgidx

PathHandleGraph* vg::Viz::xgidx = nullptr

private

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The documentation for this class was generated from the following files:

• src/viz.hpp
• src/viz.cpp