vg::subpath_t Class Reference

#include <multipath_alignment.hpp>

Public Member Functions
	subpath_t ()=default
	subpath_t (const subpath_t &)=default
	subpath_t (subpath_t &&)=default
	~subpath_t ()=default
subpath_t &	operator= (const subpath_t &)=default
subpath_t &	operator= (subpath_t &&)=default
const path_t &	path () const
path_t *	mutable_path ()
bool	has_path () const
const vector< uint32_t > &	next () const
uint32_t	next (size_t i) const
vector< uint32_t > *	mutable_next ()
void	set_next (size_t i, uint32_t n)
void	add_next (uint32_t n)
void	clear_next ()
size_t	next_size () const
bool	has_next () const
int32_t	score () const
void	set_score (int32_t s)
const vector< connection_t > &	connection () const
const connection_t &	connection (size_t i) const
vector< connection_t > *	mutable_connection ()
connection_t *	mutable_connection (size_t i)
void	set_connection (size_t i, const connection_t &c)
connection_t *	add_connection ()
void	clear_connection ()
size_t	connection_size () const
bool	has_connection () const

Private Attributes
path_t	_path
vector< uint32_t >	_next
int32_t	_score
vector< connection_t >	_connection

Constructor & Destructor Documentation

subpath_t() [1/3]

vg::subpath_t::subpath_t ( )

default

subpath_t() [2/3]

vg::subpath_t::subpath_t ( const subpath_t &  )

default

subpath_t() [3/3]

vg::subpath_t::subpath_t ( subpath_t &&  )

default

~subpath_t()

vg::subpath_t::~subpath_t ( )

default

Member Function Documentation

add_connection()

connection_t * vg::subpath_t::add_connection ( )

inline

add_next()

void vg::subpath_t::add_next ( uint32_t  n )

inline

clear_connection()

void vg::subpath_t::clear_connection ( )

inline

clear_next()

void vg::subpath_t::clear_next ( )

inline

connection() [1/2]

const vector< connection_t > & vg::subpath_t::connection ( ) const

inline

connection() [2/2]

const connection_t & vg::subpath_t::connection ( size_t  i ) const

inline

connection_size()

size_t vg::subpath_t::connection_size ( ) const

inline

has_connection()

bool vg::subpath_t::has_connection ( ) const

inline

has_next()

bool vg::subpath_t::has_next ( ) const

inline

has_path()

bool vg::subpath_t::has_path ( ) const

inline

mutable_connection() [1/2]

vector< connection_t > * vg::subpath_t::mutable_connection ( )

inline

mutable_connection() [2/2]

connection_t * vg::subpath_t::mutable_connection ( size_t  i )

inline

mutable_next()

vector< uint32_t > * vg::subpath_t::mutable_next ( )

inline

mutable_path()

path_t * vg::subpath_t::mutable_path ( )

inline

next() [1/2]

const vector< uint32_t > & vg::subpath_t::next ( ) const

inline

next() [2/2]

uint32_t vg::subpath_t::next ( size_t  i ) const

inline

next_size()

size_t vg::subpath_t::next_size ( ) const

inline

operator=() [1/2]

subpath_t& vg::subpath_t::operator= ( const subpath_t &  )

default

operator=() [2/2]

subpath_t& vg::subpath_t::operator= ( subpath_t &&  )

default

path()

const path_t & vg::subpath_t::path ( ) const

inline

score()

int32_t vg::subpath_t::score ( ) const

inline

set_connection()

void vg::subpath_t::set_connection ( size_t  i, const connection_t &  c  )

inline

set_next()

void vg::subpath_t::set_next ( size_t  i, uint32_t  n  )

inline

set_score()

void vg::subpath_t::set_score ( int32_t  s )

inline

Member Data Documentation

_connection

vector<connection_t> vg::subpath_t::_connection

private

_next

vector<uint32_t> vg::subpath_t::_next

private

_path

path_t vg::subpath_t::_path

private

_score

int32_t vg::subpath_t::_score

private

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The documentation for this class was generated from the following file:

• src/multipath_alignment.hpp