graph.hpp File Reference

#include <vg/vg.pb.h>
#include "types.hpp"
#include "handle.hpp"
#include <set>
#include <algorithm>

Namespaces
	vg

Functions
void	vg::sort_by_id_dedup_and_clean (Graph &graph)
	remove duplicates and sort by id More...
void	vg::remove_duplicates (Graph &graph)
	remove duplicate nodes and edges More...
void	vg::remove_duplicate_edges (Graph &graph)
	remove duplicate edges More...
void	vg::remove_duplicate_nodes (Graph &graph)
	remove duplicate nodes More...
void	vg::remove_orphan_edges (Graph &graph)
	remove edges that link to a node that is not in the graph More...
void	vg::sort_by_id (Graph &graph)
	order the nodes and edges in the graph by id More...
void	vg::sort_nodes_by_id (Graph &graph)
	order the nodes in the graph by id More...
void	vg::sort_edges_by_id (Graph &graph)
	order the edges in the graph by id pairs More...
bool	vg::is_id_sortable (const Graph &graph)
	returns true if the graph is id-sortable (no reverse links) More...
bool	vg::has_inversion (const Graph &graph)
	returns true if we find an edge that may specify an inversion More...
void	vg::flip_doubly_reversed_edges (Graph &graph)
	clean up doubly-reversed edges More...
void	vg::from_handle_graph (const HandleGraph &from, Graph &to)
void	vg::from_path_handle_graph (const PathHandleGraph &from, Graph &to)