haplotype_indexer.cpp File Reference

#include "haplotype_indexer.hpp"
#include <iostream>
#include <mutex>
#include <vector>
#include <string>
#include <vg/io/stream.hpp>
#include <gbwtgraph/algorithms.h>
#include <gbwtgraph/path_cover.h>
#include "gbwt_helper.hpp"
#include "alignment.hpp"
#include "hash_map.hpp"
#include "path.hpp"

Namespaces
	vg

Detailed Description

: implementations of haplotype indexing with the GBWT