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| void | vg::for_each_kmer (const HandleGraph &graph, size_t k, const function< void(const kmer_t &)> &lambda, id_t head_id, id_t tail_id, atomic< int > *stop_flag) |
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| ostream & | vg::operator<< (ostream &out, const kmer_t &kmer) |
| | Print a kmer_t to a stream. More...
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| void | vg::kmer_to_gcsa_kmers (const kmer_t &kmer, const gcsa::Alphabet &alpha, const function< void(const gcsa::KMer &)> &lambda) |
| | Convert the kmer_t to a set of gcsa2 binary kmers which are exposed via a callback. More...
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| gcsa::byte_type | vg::encode_chars (const vector< char > &chars, const gcsa::Alphabet &alpha) |
| | Encode the chars into the gcsa2 byte. More...
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| void | vg::write_gcsa_kmers (const HandleGraph &graph, int kmer_size, ostream &out, size_t &size_limit, id_t head_id, id_t tail_id) |
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| string | vg::write_gcsa_kmers_to_tmpfile (const HandleGraph &graph, int kmer_size, size_t &size_limit, id_t head_id, id_t tail_id, const string &base_file_name) |
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