#include <kmer.hpp>

Public Member Functions
	kmer_t (const string &s, const pos_t &b, const pos_t &e, const handle_t &c)

Public Attributes
string	seq
	the kmer More...

pos_t	begin
	our start position More...

pos_t	end
	Used in construction. More...

handle_t	curr
	one past the (current) end of the kmer More...

vector< pos_t >	prev_pos
	These are filled when construction is complete. More...

vector< pos_t >	next_pos

vector< char >	prev_char

vector< char >	next_char

Detailed Description

Stores a kmer in the context of a graph. The context may be used to double the kmer length of a deBruijn graph encoded in these, which is done in GCSA2's index construction.

Constructor & Destructor Documentation

◆ kmer_t()

vg::kmer_t::kmer_t	(	const string &	s,
		const pos_t &	b,
		const pos_t &	e,
		const handle_t &	c
	)

inline

Member Data Documentation

◆ begin

pos_t vg::kmer_t::begin

our start position

◆ curr

handle_t vg::kmer_t::curr

one past the (current) end of the kmer

◆ end

pos_t vg::kmer_t::end

Used in construction.

◆ next_char

vector<char> vg::kmer_t::next_char

◆ next_pos

vector<pos_t> vg::kmer_t::next_pos

◆ prev_char

vector<char> vg::kmer_t::prev_char

◆ prev_pos

vector<pos_t> vg::kmer_t::prev_pos

These are filled when construction is complete.

the next handle we extend into

◆ seq

string vg::kmer_t::seq

the kmer

The documentation for this struct was generated from the following file:

src/kmer.hpp

Public Member Functions

Public Attributes