phase_unfolder.hpp File Reference

#include "vg.hpp"
#include "handle.hpp"
#include "hash_map.hpp"
#include "gbwt_helper.hpp"
#include <algorithm>
#include <list>
#include <stack>
#include <utility>
#include <vector>
#include <gcsa/support.h>
#include <bdsg/hash_graph.hpp>

Classes
class	vg::PhaseUnfolder

Namespaces
	vg

Detailed Description

This file contains the PhaseUnfolder, which replaces pruned regions of the graph with paths supported by XG paths or GBWT threads.