position.hpp File Reference

#include <vg/vg.pb.h>
#include "types.hpp"
#include "utility.hpp"
#include "vg/io/json2pb.h"
#include <gcsa/gcsa.h>
#include "handle.hpp"

Classes
class	vg::position_t

Namespaces
	vg

Functions
Position	vg::reverse (const Position &pos, size_t node_length)
pos_t	vg::make_pos_t (const Position &pos)
	Convert a Position to a (much smaller) pos_t. More...
pos_t	vg::make_pos_t (const position_t &pos)
pos_t	vg::make_pos_t (gcsa::node_type node)
	Create a pos_t from a gcsa node. More...
Position	vg::make_position (const pos_t &pos)
	Convert a pos_t to a Position. More...
Position	vg::make_position (id_t id, bool is_rev, offset_t off)
	Create a Position from a Node ID, an orientation flag, and an offset along that strand of the node. More...
Position	vg::make_position (gcsa::node_type node)
	Make a Position from a gcsa node. More...
pair< int64_t, int64_t >	vg::min_oriented_distances (const unordered_map< path_handle_t, vector< pair< size_t, bool > > > &path_offsets1, const unordered_map< path_handle_t, vector< pair< size_t, bool > > > &path_offsets2)
	Find the min distance in the path offsets where the path orientation is the same and different. More...
string	vg::debug_string (const position_t &pos)
void	vg::from_proto_position (const Position &from, position_t &to)

Detailed Description

Functions for working with Positions and pos_ts.