stream_index.hpp File Reference

#include <iostream>
#include <vector>
#include <set>
#include <unordered_map>
#include <type_traits>
#include "types.hpp"
#include <vg/vg.pb.h>
#include <vg/io/protobuf_iterator.hpp>
#include "scanner.hpp"

Classes
class	vg::BitString
class	vg::BitStringTree< Item >
struct	vg::BitStringTree< Item >::TreeNode
class	vg::StreamIndexBase
class	vg::StreamIndex< Message >

Namespaces
	vg

Typedefs
using	vg::GAMIndex = StreamIndex< Alignment >
	Define a GAM index as a stream index over a stream of Alignments. More...

Functions
auto	vg::operator<< (ostream &out, const BitString &bs)
	Allow BitStrings to be printed for debugging. More...

Detailed Description

Contains the StreamIndex template, which allows lookup by relevant node ID in sorted VPKG-formatted files.