GraphHandler Struct Reference

Public Types
enum	graph_type {   graph_none, graph_path, graph_source, graph_gbz,   graph_gbwtgraph }

Public Member Functions
const PathHandleGraph *	get_any_graph (const GBWTConfig &config)
void	get_graph (const GBWTConfig &config)
void	use (std::unique_ptr< gbwtgraph::SequenceSource > &source)
void	load_gbz (GBWTHandler &gbwts, GBWTConfig &config)
void	load_gbwtgraph (GBWTHandler &gbwts, GBWTConfig &config)
void	clear ()
void	serialize_segment_translation (const GBWTConfig &config) const

Public Attributes
std::unique_ptr< PathHandleGraph >	path_graph = nullptr
std::unique_ptr< gbwtgraph::SequenceSource >	sequence_source = nullptr
std::unique_ptr< gbwtgraph::GBWTGraph >	gbwt_graph = nullptr
graph_type	in_use = graph_none

Member Enumeration Documentation

graph_type

enum GraphHandler::graph_type

Enumerator
graph_none
graph_path
graph_source
graph_gbz
graph_gbwtgraph

Member Function Documentation

clear()

void GraphHandler::clear

(

)

get_any_graph()

const PathHandleGraph * GraphHandler::get_any_graph

(

const GBWTConfig &

config

)

get_graph()

void GraphHandler::get_graph

(

const GBWTConfig &

config

)

load_gbwtgraph()

void GraphHandler::load_gbwtgraph	(	GBWTHandler &	gbwts,
		GBWTConfig &	config
	)

load_gbz()

void GraphHandler::load_gbz	(	GBWTHandler &	gbwts,
		GBWTConfig &	config
	)

serialize_segment_translation()

void GraphHandler::serialize_segment_translation

(

const GBWTConfig &

config

)

const

use()

void GraphHandler::use

(

std::unique_ptr< gbwtgraph::SequenceSource > &

source

)

Member Data Documentation

gbwt_graph

std::unique_ptr<gbwtgraph::GBWTGraph> GraphHandler::gbwt_graph = nullptr

in_use

graph_type GraphHandler::in_use = graph_none

path_graph

std::unique_ptr<PathHandleGraph> GraphHandler::path_graph = nullptr

sequence_source

std::unique_ptr<gbwtgraph::SequenceSource> GraphHandler::sequence_source = nullptr

---

The documentation for this struct was generated from the following file:

• src/subcommand/gbwt_main.cpp