ScoringOptions Struct Reference

Options struct for scoring-related parameters. Defaults are in aligner.hpp. More...

Public Attributes
int8_t	match = default_match
int8_t	mismatch = default_mismatch
int8_t	gap_open = default_gap_open
int8_t	gap_extend = default_gap_extension
int8_t	full_length_bonus = default_full_length_bonus

Detailed Description

Options struct for scoring-related parameters. Defaults are in aligner.hpp.

Member Data Documentation

full_length_bonus

int8_t ScoringOptions::full_length_bonus = default_full_length_bonus

gap_extend

int8_t ScoringOptions::gap_extend = default_gap_extension

gap_open

int8_t ScoringOptions::gap_open = default_gap_open

match

int8_t ScoringOptions::match = default_match

mismatch

int8_t ScoringOptions::mismatch = default_mismatch

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The documentation for this struct was generated from the following file:

• src/subcommand/giraffe_main.cpp