#include <constructor.hpp>

Public Attributes
Graph	graph

id_t	max_id

set< id_t >	left_ends

set< id_t >	right_ends

Detailed Description

Represents a constructed region of the graph along a single linear sequence. Contains the protobuf Graph holding all the created components (which may be too large to serialize), a set of node IDs whose left sides need to be connected to when you connect to the start of the chunk, and a set of node IDs whose right sides need to be connected to when you connect to the end of the chunk.

Node ordering is restricted: if there is a single source, it must be the very first node in the graph with ID 1, and if there is a single sink it must be the very last node in the graph with ID max_id. Additionally, single sources and single sinks must be visited by only a single path, the reference path.

The overall reference path must also always be path 0. Also, all mappings in all paths must be full-length matches on the forward strand, and they must be sorted by rank. Ranks must be filled and start with rank 1 in each path.

Member Data Documentation

◆ graph

Graph vg::ConstructedChunk::graph

◆ left_ends

set<id_t> vg::ConstructedChunk::left_ends

◆ max_id

id_t vg::ConstructedChunk::max_id

◆ right_ends

set<id_t> vg::ConstructedChunk::right_ends

The documentation for this struct was generated from the following file:

src/constructor.hpp