vg::GFFRecord Struct Reference

#include <gff_reader.hpp>

Public Member Functions
	GFFRecord ()=default
	~GFFRecord ()=default
map< string, string >	parse_attributes ()

Public Attributes
string	sequence_id
string	source
string	type
int64_t	start = -1
int64_t	end = -1
double	score = numeric_limits<double>::quiet_NaN()
bool	strand_is_rev = false
int32_t	phase = -1
string	attributes

Detailed Description

A package of the information contained in a GFF3 record. The null "." entries in a a GFF are parsed into empty strings or the default values of the numerical fields as given below.

Constructor & Destructor Documentation

GFFRecord()

vg::GFFRecord::GFFRecord ( )

default

~GFFRecord()

vg::GFFRecord::~GFFRecord ( )

default

Member Function Documentation

parse_attributes()

map< string, string > vg::GFFRecord::parse_attributes

(

)

Member Data Documentation

attributes

string vg::GFFRecord::attributes

end

int64_t vg::GFFRecord::end = -1

phase

int32_t vg::GFFRecord::phase = -1

score

double vg::GFFRecord::score = numeric_limits<double>::quiet_NaN()

sequence_id

string vg::GFFRecord::sequence_id

source

string vg::GFFRecord::source

start

int64_t vg::GFFRecord::start = -1

strand_is_rev

bool vg::GFFRecord::strand_is_rev = false

type

string vg::GFFRecord::type

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The documentation for this struct was generated from the following files:

• src/gff_reader.hpp
• src/gff_reader.cpp