vg::HaplotypePartitioner::Parameters Struct Reference

Parameters for partition_haplotypes(). More...

#include <recombinator.hpp>

Public Member Functions
void	print (std::ostream &out) const
	Print a description of the parameters. More...

Public Attributes
size_t	subchain_length = SUBCHAIN_LENGTH
	Target length for subchains (in bp). More...
size_t	approximate_jobs = APPROXIMATE_JOBS
	Generate approximately this many jobs. More...
bool	linear_structure = false

Detailed Description

Parameters for partition_haplotypes().

Member Function Documentation

print()

void vg::HaplotypePartitioner::Parameters::print

(

std::ostream &

out

)

const

Print a description of the parameters.

Member Data Documentation

approximate_jobs

size_t vg::HaplotypePartitioner::Parameters::approximate_jobs = APPROXIMATE_JOBS

Generate approximately this many jobs.

linear_structure

bool vg::HaplotypePartitioner::Parameters::linear_structure = false

Avoid placing subchain boundaries in places where haplotypes would cross them multiple times.

subchain_length

size_t vg::HaplotypePartitioner::Parameters::subchain_length = SUBCHAIN_LENGTH

Target length for subchains (in bp).

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The documentation for this struct was generated from the following files:

• src/recombinator.hpp
• src/recombinator.cpp