Representation of a top-level chain. More...

#include <recombinator.hpp>

Public Member Functions
void	simple_sds_serialize (std::ostream &out) const
	Serializes the object to a stream in the simple-sds format. More...

void	simple_sds_load (std::istream &in)
	Loads the object from a stream in the simple-sds format. More...

void	load_old (std::istream &in)
	Loads the old version without a contig name. More...

size_t	simple_sds_size () const
	Returns the size of the object in elements. More...

Public Attributes
size_t	offset
	Offset in the child list of the root snarl. More...

size_t	job_id
	GBWT construction job for this chain. More...

std::string	contig_name
	Contig name corresponding to the chain. More...

std::vector< Subchain >	subchains
	Subchains in the order they appear in. More...

Detailed Description

Representation of a top-level chain.

Member Function Documentation

void vg::Haplotypes::TopLevelChain::load_old ( std::istream & in )

Loads the old version without a contig name.

void vg::Haplotypes::TopLevelChain::simple_sds_load ( std::istream & in )

Loads the object from a stream in the simple-sds format.

void vg::Haplotypes::TopLevelChain::simple_sds_serialize ( std::ostream & out ) const

Serializes the object to a stream in the simple-sds format.

size_t vg::Haplotypes::TopLevelChain::simple_sds_size ( ) const

Returns the size of the object in elements.

std::string vg::Haplotypes::TopLevelChain::contig_name

Contig name corresponding to the chain.

size_t vg::Haplotypes::TopLevelChain::job_id

GBWT construction job for this chain.

size_t vg::Haplotypes::TopLevelChain::offset

Offset in the child list of the root snarl.

std::vector<Subchain> vg::Haplotypes::TopLevelChain::subchains

Subchains in the order they appear in.

The documentation for this struct was generated from the following files: