vg::MIPayload Struct Reference

#include <snarl_distance_index.hpp>

Public Types
typedef std::uint64_t	code_type

Static Public Member Functions
static gbwtgraph::Payload	encode (MIPayloadValues info)
static void	set_record_offset (gbwtgraph::Payload &code, size_t record_offset)
static void	set_parent_record_offset (gbwtgraph::Payload &code, size_t parent_record_offset)
static void	set_node_record_offset (gbwtgraph::Payload &code, size_t node_record_offset)
static void	set_node_length (gbwtgraph::Payload &code, size_t node_length)
static void	set_is_reversed (gbwtgraph::Payload &code, bool is_reversed)
static void	set_is_trivial_chain (gbwtgraph::Payload &code, bool is_trivial_chain)
static void	set_parent_is_chain (gbwtgraph::Payload &code, bool parent_is_chain)
static void	set_parent_is_root (gbwtgraph::Payload &code, bool parent_is_root)
static void	set_prefix_sum (gbwtgraph::Payload &code, size_t prefix_sum)
static void	set_chain_component (gbwtgraph::Payload &code, size_t chain_component)
static size_t	record_offset (const gbwtgraph::Payload code)
static size_t	parent_record_offset (const gbwtgraph::Payload code)
static size_t	node_record_offset (const gbwtgraph::Payload code)
static size_t	node_length (const gbwtgraph::Payload code)
static bool	is_reversed (const gbwtgraph::Payload code)
static bool	is_trivial_chain (const gbwtgraph::Payload code)
static bool	parent_is_chain (const gbwtgraph::Payload code)
static bool	parent_is_root (const gbwtgraph::Payload code)
static size_t	prefix_sum (const gbwtgraph::Payload code)
static size_t	chain_component (const gbwtgraph::Payload code)
static MIPayloadValues	decode (gbwtgraph::Payload code)

Static Public Attributes
constexpr static gbwtgraph::Payload	NO_CODE = gbwtgraph::Payload::default_payload()
constexpr static std::size_t	NO_VALUE = std::numeric_limits<size_t>::max()
const static size_t	PARENT_RECORD_OFFSET = 0
const static size_t	PARENT_RECORD_WIDTH = 32
const static code_type	PARENT_RECORD_MASK = (static_cast<code_type>(1) << PARENT_RECORD_WIDTH) - 1
const static size_t	NODE_RECORD_OFFSET = 32
const static size_t	NODE_RECORD_WIDTH = 32
const static code_type	NODE_RECORD_MASK = (static_cast<code_type>(1) << NODE_RECORD_WIDTH) - 1
const static size_t	CHAIN_COMPONENT_OFFSET = 0
const static size_t	CHAIN_COMPONENT_WIDTH = 8
const static code_type	CHAIN_COMPONENT_MASK = (static_cast<code_type>(1) << CHAIN_COMPONENT_WIDTH) - 1
const static size_t	PREFIX_SUM_OFFSET = 8
const static size_t	PREFIX_SUM_WIDTH = 32
const static code_type	PREFIX_SUM_MASK = (static_cast<code_type>(1) << PREFIX_SUM_WIDTH) - 1
const static size_t	PARENT_IS_ROOT_OFFSET = 40
const static size_t	PARENT_IS_CHAIN_OFFSET = 41
const static size_t	IS_TRIVIAL_CHAIN_OFFSET = 42
const static size_t	IS_REVERSED_OFFSET = 43
const static size_t	NODE_LENGTH_OFFSET = 44
const static size_t	NODE_LENGTH_WIDTH = 12
const static code_type	NODE_LENGTH_MASK = (static_cast<code_type>(1) << NODE_LENGTH_WIDTH) - 1
const static size_t	NODE_RECORD_OFFSET_OFFSET = 56
const static size_t	NODE_RECORD_OFFSET_WIDTH = 8
const static code_type	NODE_RECORD_OFFSET_MASK = (static_cast<code_type>(1) << NODE_RECORD_OFFSET_WIDTH) - 1

Member Typedef Documentation

code_type

typedef std::uint64_t vg::MIPayload::code_type

Member Function Documentation

chain_component()

static size_t vg::MIPayload::chain_component ( const gbwtgraph::Payload  code )

inlinestatic

decode()

static MIPayloadValues vg::MIPayload::decode ( gbwtgraph::Payload  code )

inlinestatic

encode()

static gbwtgraph::Payload vg::MIPayload::encode ( MIPayloadValues  info )

inlinestatic

is_reversed()

static bool vg::MIPayload::is_reversed ( const gbwtgraph::Payload  code )

inlinestatic

is_trivial_chain()

static bool vg::MIPayload::is_trivial_chain ( const gbwtgraph::Payload  code )

inlinestatic

node_length()

static size_t vg::MIPayload::node_length ( const gbwtgraph::Payload  code )

inlinestatic

node_record_offset()

static size_t vg::MIPayload::node_record_offset ( const gbwtgraph::Payload  code )

inlinestatic

parent_is_chain()

static bool vg::MIPayload::parent_is_chain ( const gbwtgraph::Payload  code )

inlinestatic

parent_is_root()

static bool vg::MIPayload::parent_is_root ( const gbwtgraph::Payload  code )

inlinestatic

parent_record_offset()

static size_t vg::MIPayload::parent_record_offset ( const gbwtgraph::Payload  code )

inlinestatic

prefix_sum()

static size_t vg::MIPayload::prefix_sum ( const gbwtgraph::Payload  code )

inlinestatic

record_offset()

static size_t vg::MIPayload::record_offset ( const gbwtgraph::Payload  code )

inlinestatic

set_chain_component()

static void vg::MIPayload::set_chain_component ( gbwtgraph::Payload &  code, size_t  chain_component  )

inlinestatic

set_is_reversed()

static void vg::MIPayload::set_is_reversed ( gbwtgraph::Payload &  code, bool  is_reversed  )

inlinestatic

set_is_trivial_chain()

static void vg::MIPayload::set_is_trivial_chain ( gbwtgraph::Payload &  code, bool  is_trivial_chain  )

inlinestatic

set_node_length()

static void vg::MIPayload::set_node_length ( gbwtgraph::Payload &  code, size_t  node_length  )

inlinestatic

set_node_record_offset()

static void vg::MIPayload::set_node_record_offset ( gbwtgraph::Payload &  code, size_t  node_record_offset  )

inlinestatic

set_parent_is_chain()

static void vg::MIPayload::set_parent_is_chain ( gbwtgraph::Payload &  code, bool  parent_is_chain  )

inlinestatic

set_parent_is_root()

static void vg::MIPayload::set_parent_is_root ( gbwtgraph::Payload &  code, bool  parent_is_root  )

inlinestatic

set_parent_record_offset()

static void vg::MIPayload::set_parent_record_offset ( gbwtgraph::Payload &  code, size_t  parent_record_offset  )

inlinestatic

set_prefix_sum()

static void vg::MIPayload::set_prefix_sum ( gbwtgraph::Payload &  code, size_t  prefix_sum  )

inlinestatic

set_record_offset()

static void vg::MIPayload::set_record_offset ( gbwtgraph::Payload &  code, size_t  record_offset  )

inlinestatic

Member Data Documentation

CHAIN_COMPONENT_MASK

const static code_type vg::MIPayload::CHAIN_COMPONENT_MASK = (static_cast<code_type>(1) << CHAIN_COMPONENT_WIDTH) - 1

static

CHAIN_COMPONENT_OFFSET

const static size_t vg::MIPayload::CHAIN_COMPONENT_OFFSET = 0

static

CHAIN_COMPONENT_WIDTH

const static size_t vg::MIPayload::CHAIN_COMPONENT_WIDTH = 8

static

IS_REVERSED_OFFSET

const static size_t vg::MIPayload::IS_REVERSED_OFFSET = 43

static

IS_TRIVIAL_CHAIN_OFFSET

const static size_t vg::MIPayload::IS_TRIVIAL_CHAIN_OFFSET = 42

static

NO_CODE

constexpr gbwtgraph::Payload vg::MIPayload::NO_CODE = gbwtgraph::Payload::default_payload()

staticconstexpr

NO_VALUE

constexpr size_t vg::MIPayload::NO_VALUE = std::numeric_limits<size_t>::max()

staticconstexpr

NODE_LENGTH_MASK

const static code_type vg::MIPayload::NODE_LENGTH_MASK = (static_cast<code_type>(1) << NODE_LENGTH_WIDTH) - 1

static

NODE_LENGTH_OFFSET

const static size_t vg::MIPayload::NODE_LENGTH_OFFSET = 44

static

NODE_LENGTH_WIDTH

const static size_t vg::MIPayload::NODE_LENGTH_WIDTH = 12

static

NODE_RECORD_MASK

const static code_type vg::MIPayload::NODE_RECORD_MASK = (static_cast<code_type>(1) << NODE_RECORD_WIDTH) - 1

static

NODE_RECORD_OFFSET

const static size_t vg::MIPayload::NODE_RECORD_OFFSET = 32

static

NODE_RECORD_OFFSET_MASK

const static code_type vg::MIPayload::NODE_RECORD_OFFSET_MASK = (static_cast<code_type>(1) << NODE_RECORD_OFFSET_WIDTH) - 1

static

NODE_RECORD_OFFSET_OFFSET

const static size_t vg::MIPayload::NODE_RECORD_OFFSET_OFFSET = 56

static

NODE_RECORD_OFFSET_WIDTH

const static size_t vg::MIPayload::NODE_RECORD_OFFSET_WIDTH = 8

static

NODE_RECORD_WIDTH

const static size_t vg::MIPayload::NODE_RECORD_WIDTH = 32

static

PARENT_IS_CHAIN_OFFSET

const static size_t vg::MIPayload::PARENT_IS_CHAIN_OFFSET = 41

static

PARENT_IS_ROOT_OFFSET

const static size_t vg::MIPayload::PARENT_IS_ROOT_OFFSET = 40

static

PARENT_RECORD_MASK

const static code_type vg::MIPayload::PARENT_RECORD_MASK = (static_cast<code_type>(1) << PARENT_RECORD_WIDTH) - 1

static

PARENT_RECORD_OFFSET

const static size_t vg::MIPayload::PARENT_RECORD_OFFSET = 0

static

PARENT_RECORD_WIDTH

const static size_t vg::MIPayload::PARENT_RECORD_WIDTH = 32

static

PREFIX_SUM_MASK

const static code_type vg::MIPayload::PREFIX_SUM_MASK = (static_cast<code_type>(1) << PREFIX_SUM_WIDTH) - 1

static

PREFIX_SUM_OFFSET

const static size_t vg::MIPayload::PREFIX_SUM_OFFSET = 8

static

PREFIX_SUM_WIDTH

const static size_t vg::MIPayload::PREFIX_SUM_WIDTH = 32

static

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The documentation for this struct was generated from the following files:

• src/snarl_distance_index.hpp
• src/snarl_distance_index.cpp