Public Member Functions
	MultipathProblem (const multipath_alignment_t &multipath_aln, bool subpath_global, bool forward)

Public Attributes
vector< int32_t >	prefix_score

vector< int64_t >	prev_subpath

vector< int64_t >	prefix_length

Detailed Description

We define this struct for holding the dynamic programming problem for a multipath alignment, which we use for finding the optimal alignment, scoring the optimal alignment, and enumerating the top alignments.

Constructor & Destructor Documentation

◆ MultipathProblem()

vg::MultipathProblem::MultipathProblem	(	const multipath_alignment_t &	multipath_aln,
		bool	subpath_global,
		bool	forward
	)

inline

Make a new MultipathProblem over the given number of subpaths with scores initialized according to whether we're doing a local or global traceback

Member Data Documentation

◆ prefix_length

vector<int64_t> vg::MultipathProblem::prefix_length

◆ prefix_score

vector<int32_t> vg::MultipathProblem::prefix_score

◆ prev_subpath

vector<int64_t> vg::MultipathProblem::prev_subpath

The documentation for this struct was generated from the following file:

src/multipath_alignment.cpp

Public Member Functions