vg::Primer Struct Reference

#include <primer_filter.hpp>

Public Attributes
string	sequence
bool	left = true
size_t	position_chromosome = numeric_limits<size_t>::max()
size_t	position_template = numeric_limits<size_t>::max()
size_t	length = numeric_limits<size_t>::max()
size_t	offset = numeric_limits<size_t>::max()
vector< size_t >	mapped_nodes_ids

Detailed Description

Primer struct contains primer attributes, including sequence, left/right primer, position on the reference genome, length, index offset in corresponding node on sequence graph, and vector of corresponding nodes on the sequence graph. Everything is in the positive/forward orientation.

Member Data Documentation

left

bool vg::Primer::left = true

length

size_t vg::Primer::length = numeric_limits<size_t>::max()

mapped_nodes_ids

vector<size_t> vg::Primer::mapped_nodes_ids

offset

size_t vg::Primer::offset = numeric_limits<size_t>::max()

position_chromosome

size_t vg::Primer::position_chromosome = numeric_limits<size_t>::max()

position_template

size_t vg::Primer::position_template = numeric_limits<size_t>::max()

sequence

string vg::Primer::sequence

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The documentation for this struct was generated from the following file:

• src/primer_filter.hpp