Statistics on the generated haplotypes. More...

#include <recombinator.hpp>

Public Member Functions
void	combine (const Statistics &another)
	Combines the statistics into this object. More...

std::ostream &	print (std::ostream &out) const
	Prints the statistics and returns the output stream. More...

Public Attributes
size_t	chains = 0
	Number of top-level chains. More...

size_t	subchains = 0
	Number of subchains. More...

size_t	fragments = 0
	Number of fragments. More...

size_t	full_haplotypes = 0
	Number of top-level chains where full haplotypes were taken. More...

size_t	haplotypes = 0
	Number of haplotypes generated. More...

size_t	connections = 0
	Number of times a haplotype was extended from a subchain to the next subchain. More...

size_t	ref_paths = 0
	Number of reference paths included. More...

size_t	kmers = 0
	Number of kmers selected. More...

double	score = 0.0
	Total score for selected sequences. More...

Detailed Description

Statistics on the generated haplotypes.

Member Function Documentation

◆ combine()

void vg::Recombinator::Statistics::combine ( const Statistics & another )

Combines the statistics into this object.

◆ print()

std::ostream & vg::Recombinator::Statistics::print ( std::ostream & out ) const

Prints the statistics and returns the output stream.

Member Data Documentation

◆ chains

size_t vg::Recombinator::Statistics::chains = 0

Number of top-level chains.

◆ connections

size_t vg::Recombinator::Statistics::connections = 0

Number of times a haplotype was extended from a subchain to the next subchain.

◆ fragments

size_t vg::Recombinator::Statistics::fragments = 0

Number of fragments.

◆ full_haplotypes

size_t vg::Recombinator::Statistics::full_haplotypes = 0

Number of top-level chains where full haplotypes were taken.

◆ haplotypes

size_t vg::Recombinator::Statistics::haplotypes = 0

Number of haplotypes generated.

◆ kmers

size_t vg::Recombinator::Statistics::kmers = 0

Number of kmers selected.

◆ ref_paths

size_t vg::Recombinator::Statistics::ref_paths = 0

Number of reference paths included.

◆ score

double vg::Recombinator::Statistics::score = 0.0

Total score for selected sequences.

◆ subchains

size_t vg::Recombinator::Statistics::subchains = 0

Number of subchains.

The documentation for this struct was generated from the following files:

src/recombinator.hpp
src/recombinator.cpp

Public Member Functions

Public Attributes