#include <hts_alignment_emitter.hpp>

Public Attributes
path_handle_t	path_handle
	Path in the graph that this entry corresponds to. More...

std::string	path_name
	Name of this path in the graph. More...

std::string	base_path_name
	Name of the base path it belongs to (possibly the same as itself) More...

size_t	path_length
	Length of that path in the graph, in bases. More...

size_t	base_path_length
	Length of the base path, which can be longer if this is a subpath. More...

std::string	base_md5_sum
	Hexadecimal MD5 sum of the full base path's sequence, or "" if not known. More...

Detailed Description

Represents a path or subpath's sequence dictionary information. Holds relevant lengths and interesting HTSlib @SQ tag values. Interpretable without the graph.

Member Data Documentation

◆ base_md5_sum

std::string vg::SequenceDictionaryEntry::base_md5_sum

Hexadecimal MD5 sum of the full base path's sequence, or "" if not known.

◆ base_path_length

size_t vg::SequenceDictionaryEntry::base_path_length

Length of the base path, which can be longer if this is a subpath.

◆ base_path_name

std::string vg::SequenceDictionaryEntry::base_path_name

Name of the base path it belongs to (possibly the same as itself)

◆ path_handle

path_handle_t vg::SequenceDictionaryEntry::path_handle

Path in the graph that this entry corresponds to.

◆ path_length

size_t vg::SequenceDictionaryEntry::path_length

Length of that path in the graph, in bases.

◆ path_name

std::string vg::SequenceDictionaryEntry::path_name

Name of this path in the graph.

The documentation for this struct was generated from the following file:

src/hts_alignment_emitter.hpp

Public Attributes