vg::SnarlDistanceIndexClusterer::Seed Struct Reference

Seed information used in Giraffe. More...

#include <snarl_seed_clusterer.hpp>

Public Member Functions
	Seed ()=default
	Seed (pos_t pos, size_t source, ZipCode zipcode)
	Seed (Seed &&other)
Seed &	operator= (Seed &&other)

Public Attributes
pos_t	pos
size_t	source
ZipCode	zipcode

Detailed Description

Seed information used in Giraffe.

Constructor & Destructor Documentation

Seed() [1/3]

vg::SnarlDistanceIndexClusterer::Seed::Seed ( )

default

Seed() [2/3]

vg::SnarlDistanceIndexClusterer::Seed::Seed ( pos_t  pos, size_t  source, ZipCode  zipcode  )

inline

Seed() [3/3]

vg::SnarlDistanceIndexClusterer::Seed::Seed ( Seed &&  other )

inline

Member Function Documentation

operator=()

Seed& vg::SnarlDistanceIndexClusterer::Seed::operator= ( Seed &&  other )

inline

Member Data Documentation

pos

pos_t vg::SnarlDistanceIndexClusterer::Seed::pos

Position of the seed.

If the minimizer is from the read sequence's forward strand, this corresponds to the first base in the read that is part of the minimizer occurrence, and points in the read's forward direction.

If the minimizer is from the read sequence's reverse strand, this corresponds to the last base in the read that is part of the minimizer occurrence, but still points in the read's forward direction.

source

size_t vg::SnarlDistanceIndexClusterer::Seed::source

zipcode

ZipCode vg::SnarlDistanceIndexClusterer::Seed::zipcode

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The documentation for this struct was generated from the following file:

• src/snarl_seed_clusterer.hpp