vg::algorithms::ChainWithRec Struct Reference

#include <chain_items.hpp>

Public Attributes
std::pair< int, std::vector< size_t > >	scored_chain
std::vector< size_t >	rec_positions
std::vector< std::pair< size_t, size_t > >	rec_intervals

Detailed Description

A single chain result: scored chain plus the recombination count observed on its endpoint. TODO: Is there a better name for the abstraction this is getting at?

Member Data Documentation

rec_intervals

std::vector<std::pair<size_t, size_t> > vg::algorithms::ChainWithRec::rec_intervals

rec_positions

std::vector<size_t> vg::algorithms::ChainWithRec::rec_positions

scored_chain

std::pair<int, std::vector<size_t> > vg::algorithms::ChainWithRec::scored_chain

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The documentation for this struct was generated from the following file:

• src/algorithms/chain_items.hpp