vg::read_alignment_index_t Struct Reference

Type to point to an alignment of a known read. More...

Public Member Functions
template<typename NestedArray >
auto	lookup_for_read_in (bool read, NestedArray &a) const -> typename std::add_lvalue_reference< decltype(a[0][0][0])>::type
template<typename NestedArray >
void	check_for_read_in (bool read, NestedArray &a) const
bool	operator== (const read_alignment_index_t &other)
bool	operator!= (const read_alignment_index_t &other)

Public Attributes
size_t	fragment
size_t	alignment

Detailed Description

Type to point to an alignment of a known read.

Member Function Documentation

check_for_read_in()

template<typename NestedArray >

void vg::read_alignment_index_t::check_for_read_in ( bool  read, NestedArray &  a  ) const

inline

Make sure that this index actually points to an alignment of the given read in the given structure. Throws if not.

lookup_for_read_in()

template<typename NestedArray >

auto vg::read_alignment_index_t::lookup_for_read_in ( bool  read, NestedArray &  a  ) const -> typename std::add_lvalue_reference<decltype(a[0][0][0])>::type

inline

Allow looking up this index in a structure organized by fragment, read, and alignment, such as in alignments, or alignment_indices.

operator!=()

bool vg::read_alignment_index_t::operator!= ( const read_alignment_index_t &  other )

inline

operator==()

bool vg::read_alignment_index_t::operator== ( const read_alignment_index_t &  other )

inline

Member Data Documentation

alignment

size_t vg::read_alignment_index_t::alignment

fragment

size_t vg::read_alignment_index_t::fragment

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The documentation for this struct was generated from the following file:

• src/minimizer_mapper.cpp