surjector.hpp File Reference

#include <set>
#include <map>
#include <atomic>
#include <sstream>
#include <algorithm>
#include <functional>
#include <limits>
#include <queue>
#include "aligner.hpp"
#include "handle.hpp"
#include "path.hpp"
#include <vg/vg.pb.h>
#include "multipath_alignment.hpp"
#include "algorithms/pad_band.hpp"

Classes
class	vg::Surjector

Namespaces
	vg

Detailed Description

A class to hold surjection algorithms that do lossy realignment restricted to paths in the graph