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| double | vg::weighted_jaccard_coefficient (const PathHandleGraph *graph, const multiset< handle_t > &target, const multiset< handle_t > &query) |
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| vector< int > | vg::get_traversal_order (const PathHandleGraph *graph, const vector< Traversal > &traversals, const vector< string > &trav_path_names, const vector< int > &ref_travs, int64_t ref_trav_idx, const vector< bool > &use_traversal) |
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| vector< vector< int > > | vg::cluster_traversals (const PathHandleGraph *graph, const vector< Traversal > &traversals, const vector< int > &traversal_order, const vector< pair< handle_t, handle_t >> &child_snarls, double min_jaccard, vector< pair< double, int64_t >> &out_info, vector< int > &out_child_snarl_to_trav) |
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| vector< vector< int > > | vg::assign_child_snarls_to_traversals (const PathHandleGraph *graph, const vector< Traversal > &traversals, const vector< pair< handle_t, handle_t >> &child_snarls) |
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| void | vg::merge_equivalent_traversals_in_graph (MutablePathHandleGraph *graph, const unordered_set< path_handle_t > &selected_paths, bool use_snarl_manager) |
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