annotate_main.cpp File Reference

#include "subcommand.hpp"
#include "../vg.hpp"
#include "../xg.hpp"
#include "../utility.hpp"
#include "../mapper.hpp"
#include <vg/io/stream.hpp>
#include <vg/io/vpkg.hpp>
#include "../alignment.hpp"
#include "../annotation.hpp"
#include "../gff_reader.hpp"
#include "../region_expander.hpp"
#include "../algorithms/alignment_path_offsets.hpp"
#include <bdsg/overlays/overlay_helper.hpp>
#include <unistd.h>
#include <getopt.h>

Typedefs
using	feature_t = pair< pair< size_t, size_t >, const string * >

Functions
void	help_annotate (char **argv)
int	main_annotate (int argc, char **argv)

Typedef Documentation

feature_t

using feature_t = pair<pair<size_t, size_t>, const string*>

Function Documentation

help_annotate()

void help_annotate

(

char **

argv

)

main_annotate()

int main_annotate	(	int	argc,
		char **	argv
	)