cactus.cpp File Reference

#include <unordered_set>
#include "cactus.hpp"
#include "vg.hpp"
#include "handle.hpp"
#include "algorithms/dfs.hpp"

Namespaces
	vg

Typedefs
typedef unordered_set< handle_t >	vg::HandleSet
typedef unordered_map< handle_t, int >	vg::Handle2Component

Functions
void *	vg::mergeNodeObjects (void *a, void *b)
void	vg::getReachableBridges2 (stCactusEdgeEnd *edgeEnd1, stHash *bridgeEndsToBridgeNodes, stList *bridgeEnds)
void	vg::getReachableBridges (stCactusEdgeEnd *edgeEnd1, stList *bridgeEnds)
void	vg::addArbitraryTelomerePair (vector< stCactusEdgeEnd * > ends, stList *telomeres)
pair< stCactusGraph *, stList * >	vg::handle_graph_to_cactus (const PathHandleGraph &graph, const unordered_set< string > &hint_paths, bool single_component)
VG	vg::cactus_to_vg (stCactusGraph *cactus_graph)
VG	vg::cactusify (VG &graph)