cactus.hpp File Reference

#include <vector>
#include <map>
#include "types.hpp"
#include "utility.hpp"
#include "nodeside.hpp"
#include "vg.hpp"
#include <sonLib/sonLib.h>
#include <sonLib/stCactusGraphs.h>

Classes
struct	vg::CactusSide

Namespaces
	vg

Functions
pair< stCactusGraph *, stList * >	vg::handle_graph_to_cactus (const PathHandleGraph &graph, const unordered_set< string > &hint_paths, bool single_component)
VG	vg::cactus_to_vg (stCactusGraph *cactus_graph)
VG	vg::cactusify (VG &graph)

Detailed Description

cactus.hpp: Wrapper utility functions for for pinchesAndCacti