#include <aligner.hpp>
Inheritance diagram for vg::BaseAligner:
Public Member Functions | |
| virtual void | align (Alignment &alignment, const HandleGraph &g, bool traceback_aln) const =0 |
Detailed Description
The abstract interface that any Aligner should implement.
Member Function Documentation
◆ align()
|
pure virtual |
Store optimal local alignment against a graph in the Alignment object. Gives the full length bonus separately on each end of the alignment.
Implemented in vg::QualAdjAligner, and vg::Aligner.
The documentation for this class was generated from the following file:
- src/aligner.hpp
