This is the complete list of members for vg::GSSWAligner, including all inherited members.

align(Alignment &alignment, const HandleGraph &g, bool traceback_aln) const =0	vg::BaseAligner	pure virtual
align_global_banded(Alignment &alignment, const HandleGraph &g, int32_t band_padding=0, bool permissive_banding=true, uint64_t max_cells=std::numeric_limits< uint64_t >::max()) const =0	vg::GSSWAligner	pure virtual
align_global_banded_multi(Alignment &alignment, vector< Alignment > &alt_alignments, const HandleGraph &g, int32_t max_alt_alns, int32_t band_padding=0, bool permissive_banding=true, uint64_t max_cells=std::numeric_limits< uint64_t >::max()) const =0	vg::GSSWAligner	pure virtual
align_pinned(Alignment &alignment, const HandleGraph &g, bool pin_left, bool xdrop=false, uint16_t xdrop_max_gap_length=default_xdrop_max_gap_length) const =0	vg::GSSWAligner	pure virtual
align_pinned_multi(Alignment &alignment, vector< Alignment > &alt_alignments, const HandleGraph &g, bool pin_left, int32_t max_alt_alns) const =0	vg::GSSWAligner	pure virtual
align_xdrop(Alignment &alignment, const HandleGraph &g, const vector< MaximalExactMatch > &mems, bool reverse_complemented, uint16_t max_gap_length=default_xdrop_max_gap_length) const =0	vg::GSSWAligner	pure virtual
align_xdrop(Alignment &alignment, const HandleGraph &g, const vector< handle_t > &order, const vector< MaximalExactMatch > &mems, bool reverse_complemented, uint16_t max_gap_length=default_xdrop_max_gap_length) const =0	vg::GSSWAligner	pure virtual
create_gssw_graph(const HandleGraph &g) const	vg::GSSWAligner	protected
deletion_aligner	vg::GSSWAligner	protected
graph_cigar(gssw_graph_mapping *gm) const	vg::GSSWAligner	protected
gssw_mapping_to_alignment(gssw_graph graph, gssw_graph_mapping gm, Alignment &alignment, bool pinned, bool pin_left) const	vg::GSSWAligner	protected
GSSWAligner(std::unique_ptr< MatrixAlignmentScorer > owned_scorer)	vg::GSSWAligner	protected
GSSWAligner(GSSWAligner &&)=default	vg::GSSWAligner
GSSWAligner(const GSSWAligner &)=delete	vg::GSSWAligner
identify_pinning_points(const HandleGraph &graph) const	vg::GSSWAligner	protected
mapq_calc	vg::GSSWAligner
operator=(GSSWAligner &&)=default	vg::GSSWAligner
operator=(const GSSWAligner &)=delete	vg::GSSWAligner
scorer	vg::GSSWAligner
unreverse_graph(gssw_graph *graph) const	vg::GSSWAligner	protected
unreverse_graph_mapping(gssw_graph_mapping *gm) const	vg::GSSWAligner	protected
~GSSWAligner()	vg::GSSWAligner	protected