#include <msa_converter.hpp>

Inheritance diagram for vg::MSAConverter:

Public Member Functions
	MSAConverter ()

	~MSAConverter ()

void	load_alignments (istream &in, string format="fasta")

VG	make_graph (bool keep_paths=true, size_t max_node_length=numeric_limits< size_t >::max())

Public Member Functions inherited from vg::Progressive
void	preload_progress (const string &message)

void	create_progress (const string &message, long count)

void	create_progress (long count)

void	ensure_progress (long count)

void	update_progress (long i)

void	increment_progress ()

void	destroy_progress (void)

Private Attributes
vector< unordered_map< string, string > >	alignments

Additional Inherited Members
Static Public Member Functions inherited from vg::Progressive
static void	with_progress (bool show_progress, const std::string &task, const std::function< void(const std::function< void(size_t, size_t)> &progress)> &callback)

Public Attributes inherited from vg::Progressive
bool	show_progress = false

Constructor & Destructor Documentation

◆ MSAConverter()

vg::MSAConverter::MSAConverter ( )

vg::MSAConverter::~MSAConverter ( )

void vg::MSAConverter::load_alignments	(	istream &	in,
		string	format = `"fasta"`
	)

VG vg::MSAConverter::make_graph	(	bool	keep_paths = `true`,
		size_t	max_node_length = `numeric_limits<size_t>::max()`
	)

vector<unordered_map<string, string> > vg::MSAConverter::alignments

private

The documentation for this class was generated from the following files: